Curate Now

During this COVID-19 pandemic, a lot of biomedical researchers are unable to work at the bench. Below are some opportunities for researchers to apply their knowledge and expertise to biocuration projects. This page will be updated as we become aware of other opportunities.

Curation opportunities

  • Annotate the COVID-19 literature using Hypothes.is. eLife, GigaScience and a few other journals (+GigaDB) have integration that allows annotations to be highlighted. Read more here.
  • Bioschemas – a schema markup specification that extends the W3C standard of schema.org to covers the biological data. The approach allows the datasets to be discovered by search mechanism such as the Google Dataset search. The specificity of the Bioschemas profile that allows specifying Gene, Protein, MolecularEntity, and ChemicalSubstance at the schematic level is the foundation for a search engine to go directly to the data. This is also much needed in the time of COVID-19. For all the available profile types, please click here. For tutorials, please click here.
  • CIViC is an open source, public domain resource for community curation of clinical interpretation of variants in cancers. Contributions from the community are welcome.
  • FAIRsharing COVID-19 collection – help FAIRsharing curate metadata on the knowledgebases, repositories and standards related to COVID-19 research. You can do this by adding resources to a spreadsheet or to FAIRsharing directly.
  • PanelApp – a database for gene panels for use in disease diagnosis that enables crowdsourcing of expert reviews. Experts can provide reviews of genes implemented in disease.
  • PomBase – provides Canto, for the community curation of fission yeast  phenotypes, gene ontology (GO_ terms, protein modifications and interactions. Canto is a generic tool and can be configured for any species. A species independent version for the community curation of GO data, and a version for the community curation of  both GO and pathogen host interaction phenotypes (in collaboration with PHI-base) will be made available soon.
  • REACTOME – Become a REACTOME contributor. REACTOME is an open-source, open access, manually curated and peer-reviewed pathway database. You will be credited with authorship or reviewership for all of your contributions.
  • UCL Functional Gene Annotation – website provides simple instructions for how to curate human proteins and microRNAs using gene ontology (GO) terms.
  • Uniprot Curation – The UniProt Knowledgebase (UniProtKB) contains a vast amount of protein sequence and function information. Expert curation in UniProtKB includes a critical review of experimental data from the literature as well as predicted data from sequence analysis tools. Community curation is welcome, click here for instructions.
  • Yeast genome – Submit information to the Saccharomyces Genome Database about your published paper.

General Guidelines and Instructions

  • Ontology Lookup Service (OLS) instructions – The Ontology Lookup Service (OLS) provides access to over 150 public biomedical ontologies. You can use OLS to search and visualize ontologies, and an API is also provided for programmatic access. Ontologies provide standard terminology for describing data that help us integrate and analyze data.
  • Review curated content in your favorite papers. Further instructions here.

Peer review opportunities

Share your opportunities

Thank you to everyone who has suggested curation opportunities so far. To share additional opportunities, please send the information to intsocbio@gmail.com.

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