Newly elected members of ISB Executive Committee

We are pleased to announce the newly elected members of the ISB Executive Committee (EC).

Mary Ann Tuli was re-elected for another term (from 2021-2024).

Parul Gupta, Federica Quaglia, and Sushma Naithani will be joining the EC for the 2021-2024 term.

Federica was one of the key organizers of the ISB Virtual Conference in 2021. Sushma Naithani is also a member of the ISB Equity, Diversity, and Inclusion Committee and chaired the EDI workshop at the Session 3 virtual session.

The new committee will start on November 01, 2021. We are thrilled to have these new members on the EC and look forward to their contributions.

Addressing Implicit or Unconscious Bias: Equity, Diversity and Inclusion Workshop at the Biocuration2021 virtual conference

By Nicole Vasilevsky

At the third session of the Virtual Biocuration Conference on August 17, 2021, Sushma Naithani, Associate Professor Senior Research & Lead Biocurator for Plant Reactome at Oregon State University led a Workshop on Addressing Implicit or Unconscious Bias organized by the Equity, Diversity, and Inclusion (EDI) committee of the International Society for Biocuration (ISB). Three invited panelists joined the discussion: Laurie Goodman, Publishing Director, GigaScience Press, Yasmin Alam-Faruque, Senior Biocurator at Healx, and Varsha Khodiyar, Data Curation Manager at Springer Nature. The session recording is available here.

The discussion started with a recap of Picture A Scientist, a documentary film that was screened by the ISB EDI in March 2021 (and is currently available on Netflix). 

Impact of ‘Picture A Scientist’ 

Picture of Scientist is a documentary that follows three women in different scientific careers: Jane Willenbring, a geologist who faced unrelenting harassment during a once-in-a-lifetime opportunity performing fieldwork in Antarctica; Nancy Hopkins, a biologist who documented concrete evidence of discrimination against women in allocating lab space at her institution, and Raychelle Burks, a chemist who has to contend with a hostile work environment as she progressed through her career. The primary consensus from our panel in response to the movie was a feeling of empathy, commiseration, and a recognition that we still need to fight for equity for women in science.

Our panelists called for the need to do more to recognize and acknowledge gender discrimination as well as other forms of unconscious biases that persist in the scientific field. They recognized unique challenges for women, people of color, immigrant scientists, etc. Opportunities to progress in science, particularly in academia, can be very limited without a Ph.D. If someone experiences issues in their lab during their early-career training, it can be really difficult to start over. In addition, training can be very specialized and limited. They called out the need for better strategies to aid scientists-in-training and junior scientists when their progress is impeded. These kinds of challenges may not exist in other male-dominated fields like law, where there are opportunities to move between firms.

For those who are dependent on employment visas from immigration offices, they may feel less empowered to take action or speak up when their immigration status is linked to their employment. In addition, the need for recommendations from previous employers may impact our sense of empowerment to take action against inappropriate workplace situations. We all need to stand up and take action when we see discrimination and inappropriate actions. We need to be allies and support each other. However, the problem with implicit bias is that many well-intentioned folks are not aware of their own biases and how it contributes to the environment of scientific institutions, fraternities and societies. Thus, we also need clear institutional guidelines, support for training the scientist in soft skills, and addressing the implicit bias for resolving the issues related to EDI. 

Our panelists brainstormed some strategies and mechanisms to address some of these problems.

  • Education and training
    • Regular education and training sessions, such as unconscious bias training are helpful to provide the most up-to-date information.
    • Tests are available that can give insight on your own potential implicit biases, such as
  • Institutions have the responsibility opportunity to aid in reporting of harassment and discrimination
    • Most institutions over a certain size have a Human Resources (HR) department and mechanisms to report harassment or inequity.
    • For example, the company Healx conducts regular surveys to understand employee engagement and satisfaction in the workplace. The survey includes questions around equity, diversity, and inclusion, and provides a platform for employees to anonymously report any inequality/harassment issues they may have encountered. 
    • When new students and employees are onboarded, they should be informed about processes for reporting issues to HR.
  • Mentorship 
    • Money talks: if women are awarded large grants earlier in their career, this may significantly help their career trajectory.
    • More established biocurators have the opportunity to help train women on how to write good grants.
    • Including women and other scientists, who are marginalized, in formal and informal collaborations, and various professional groups will help to achieve inclusion and diversity of the STEM.    
  • Defund offenders
    • Institutions and funding agencies should implement policies to take away positions and/or grant funding from people who are guilty of harassment or discrimination.

Opportunity for the ISB: Define our job titles

The panelists pointed out that standardization of job titles could help with career progression. The ISB has an opportunity to help define standardized job titles across the ranks. For example, what does a starting position look like, and what qualifications does a more advanced biocurator typically have? What is the difference between a Lead Biocurator and a Senior Biocurator? Our recent survey revealed that the majority of respondents (62%) have been in their position for 10 years or more, but only about half (49.6%) of the biocurators who responded have been promoted since they started their career in biocuration.

Length of time that ISB community members have been in their career. 131 respondents participated in the survey. The full original dataset is available here:

Job titles for biocurators vary widely and there is a lack of standardized names and titles for the biocuration positions. The field of biocuration has existed for approximately 20 years, yet there is not a widespread understanding of what a biocurator does and what a typical career progression should look like.

Based on results from a recent survey that was conducted by the EDI Subcommittee, ISB community members reported 24 unique job titles as outlined in the table below. Of note, most respondents identified as (bio)curators, but some respondents distinguished their title as a Scientific curator or Scientific Database curator, emphasizing the need for standardization of the job titles. 

Job titles reported by ISB community members in the 2021 Biocuration survey. (The full original dataset is available here: 131 respondents reported their job titles in the survey. *Includes Associate Professor and Professor, ** Includes student and Ph.D. student.

A generic biocuration position description is available on the ISB website here, which was created as an outcome of the Careers in Biocuration Workshop at the Biocuration 2018 conference in Shanghai, China. This could be used as a starting point for further definitions and standardization of position descriptions.

We need better data

As scientists, we recognize the need for concrete data and evidence to back up assertions and stimulate change. There is a call for the ISB to collect data from the biocuration community to address key questions such as:

  • Are women being paid less than men?
  • What is the gender breakdown of the membership of the ISB?
  • What percentage of women obtain grant funding compared to men?
  • Is there evidence of gender or racial discrimination in the biocuration community?
  • Are biocurators progressing in their career at the same rate as other types of scientists?

A previously published report on ‘Gender Balance at the International Society for Biocuration Annual Conferences’ is available here ( 


The EDI Subcommittee was formed as an outcome of the inaugural Equity, Diversity, and Inclusion workshop at the last in-person Biocuration conference in Cambridge, UK in 2019. This is a volunteer-run committee with members from the ISB Executive Committee and community members. Anyone is welcome to join and all contributions are valued and appreciated. We are extremely grateful to the workshop organizers, Sushma Naithani for moderating this session, and a huge thanks to our panelists, Laurie Goodman, Yasmin Alam-Faruque, and Varsha Khodiyar for their insightful perspectives and for assisting us in thinking about these important issues.

More Information

Join us: Email us at: to inquire about joining the EDI Subcommittee

Equity, Diversity, and Inclusion Subcommittee website:



Anne Niknejad, University of Lausanne and SIB Swiss Institute of Bioinformatics was unanimously selected for the Biocuration Career Award.

AnneNiknejad is an exceptional biocurator who has worked for over 10 years on the development of resources and vocabularies for the description of anatomical ontologies. She is playing a key role in curation of expression data, of anatomical and developmental ontologies, as lead curator for the Bgee project in Marc Robinson-Rechavi’s group in Lausanne. Anne’s contribution to anatomical homology has been essential to provide a large coverage of anatomical homology in a curated and structured manner originally in vHOG and since 2012 directly using Uberon ( Anne combines the capture of knowledge from textbooks of anatomy, development and zoology, with scientific literature which spans evolutionary developmental biology (Evo-Devo), paleontology, systematics, zoology and recently single-cell atlases. By creating the ontology relations of homology, Anne extracts new knowledge from these disparate sources. She also participated in the development of mechanisms to handle the contradictions which emerge from new results or differences in interpretation between reports. This homology annotation work is critical to the future success of Bgee, but also of other projects relying on comparisons between species which map to anatomy, such as the Monarch Initiative. Anne’s knowledge is not limited to anatomy and she contributed to annotations in other resources: she curated lipid structures in SwissLipids (PMID:25943471) and enzyme reactions in Rhea (PMID: 30272209). 

Thank you to the Award Committee:

Meghan Balk
Rigden, Dan
Donna Maglott
Susan Tweedie
Jana Sponarova

Amos Bairoch – Recipient of the 2021 Exceptional Contribution to Biocuration AWARD

It is our great pleasure to announce the recipient of the 2021 Exceptional Contribution to Biocuration Award:

Prof. Amos Bairoch, University of Geneva and SIB Swiss Institute of Bioinformatics. 

Amos created the Swiss-Prot knowledgebase in 1986, which rapidly became the gold standard for proteins in terms of biocuration. Nobody, except Michael Ashburner, contributed more to the biocuration field. Amos was definitively the most accurate and productive biocurator in Swiss-Prot. In 2002, he co-founded UniProt, the universal protein resource, and Swiss-Prot became UniProtKB/Swiss-Prot, the expertly curated section of UniProtKB. UniProt is the reference resource in the field of proteins: it is accessed by hundreds of thousands of users each month and is cited in tens of thousands of publications. UniProt is an Elixir core data resource. In 2009, Amos left UniProt and co-founded NextProt, a knowledge platform on human proteins, which constitutes the reference knowledgebase for human protein annotation in the context of HUPO Human Proteome Project (HPP). Last but not least, he created Cellosaurus, a knowledge resource on cell lines, which attempts to document all cell lines used in biomedical research. Cellosaurus is now considered as the reference for cell lines in biology and is an Elixir core data resource. Amos is also co-founder of the SIB Swiss Institute of Bioinformatics and of the ExPASy Bioformatics portal. But it is impossible to list all his contributions.

Congratulations to Amos!

Thank you to the Award Committee:

Meghan Balk
Rigden, Dan
Donna Maglott
Susan Tweedie
Jana Sponarova

Career paths and projections in Biocuration: Panel discussion from the Biocuration2021 virtual conference

By Nicole Vasilevsky and Sabrina Toro

The ISB hosted the second session for the Virtual Biocuration Conference on June 15, 2021. The session, chaired by Peter Uetz, Ph.D. from the Virginia Commonwealth University, focused on career paths and projections in Biocuration and hosted three panelists: Pankaj Jaiswal, Ph.D, Professor in Plant Genomics at Oregon State University (OSU) in Corvallis, Oregon; Tanya Berardini, Ph.D co-founder and Chief Scientific Officer at Phoenix Bioinformatics in Newark, California; and Nicola Mulder, Ph.D, Professor of Computational Biology at the University of Cape Town in South Africa. The session recording is available here.

Panelist paths in Biocuration

Dr. Tanya Berardini entered the biocuration field after completing a Ph.D. and a post-doc when she joined the Arabidopsis Information Resource (TAIR) as a curator. When TAIR underwent a funding crisis after many years of serving the plant genome community, Dr. Berardini and her colleagues founded the non-profit Phoenix Bioinformatics which developed a sustainable model to support the TAIR database through subscriptions and has subsequently expanded into assisting other databases and resources to address funding issues, through subscription and membership models. Dr. Beradini’s career path is unique, as she initially performed database curation for a single resource, TAIR, and now also works in an entrepreneurial position. She has learned various aspects about running a business (such as Human Resources, insurance requirements, contract negotiation), as well as curation in additional domains outside of plant biology. Dr. Beradini noted that her detailed-oriented curation skills and experience with databases were very transferable to the business world

Dr. Pankaj Jaiswal’s work on sequencing plant molecules (his initial training was in biochemistry and plant molecular biology) prompted his interest in bioinformatics analyses and genome biology curation. He currently runs a wet lab (“on the bench”) and a dry lab (“at the computer”) at OSU in the Comparative Plant Genomics department. Dr. Jaiswal leads the curation efforts for the Gramene database and the Planteome projects, which require the creation of ontologies for the standardization of plant characteristics such as gene function, phenotypes, pathways, and gene expression. Dr. Jaiswal started curating during his basic science training as he read papers learned about specific subjects and synthesized information to address biological questions. His efforts to facilitate the synthesis of information and ease of interpretation, search, and access, included networking with peers, including Gene Ontology and Model Organism Database curators, and brought him to the field of biocuration.  Dr. Jaiswal currently trains his students, post-docs, and researchers to apply data standards and learn the curation process to build upon the foundations laid by the biocuration community.
Dr. Nicola Mulder holds a Ph.D. from the University of Cape Town in South Africa, where she did basic science research and studied molecular biology of infectious diseases, which ultimately led her to bioinformatics. She became a curator at European Bioinformatics Institute (EBI),  first at SwissProt, then as part of the InterPro project, which she went on to lead. Dr. Mulder currently leads the Pan African Bioinformatics Network for the Human Heredity and Health in Africa (H3Africa) in Cape Town, which supports bioinformatics and genomic analysis in Africa. Her team brought together a global community of experts, including clinicians, biocurators, and ontologists, which led to the development of the Sickle Cell Disease Ontology (SCDO) in response to the need to standardize information around Sickle Cell Disease, and the Hearing Impairment Ontology. Dr. Mulder and her team’s curation efforts include standardizing phenotype data for research cohorts and curating genomic data for African relevance, such as curating single nucleotide polymorphism (SNPs) from African populations and curating diseases that are relevant to Africans.

Becoming a Biocurator

The field of biocuration is still relatively new and small; colleges and universities do not typically offer a degree in biocuration. Therefore, the path to becoming a biocurator rarely follows a straightforward trajectory like many other fields, as many biocurators are subject matter experts in various subdomains of biology who completed a Ph.D. in a biological area or have a background in some aspect of computer science or semantic technologies, and have an interest in standardizing data. Our panelists shared some suggestions for those interested in joining the field:

  • Draw on your area of expertise: Most databases focus on specific subject areas and expert community contributions (such as contribution to open biomedical ontologies, and all of the OBO Foundry ontologies) are always needed, welcomed, and greatly appreciated. If you notice missing information or content in a database, reach out and share your knowledge.  
  • As a researcher, curate your data before it is published: Work with the databases to make sure your data is prepared in a proper format for completeness and efficiency before you publish. Dr. Berardini mentioned that over 10,000 labs work on Arabidopsis, creating a massive backlog of papers to curate. Structuring data before and at the time of publication dramatically assists with the curation process.
  • Volunteer at databases: If you have expertise in a particular field, contact the databases directly to discuss opportunities to contribute. Volunteering can be beneficial to build your experience, provide contributions to biocuration efforts, and provide networking opportunities within the community. In addition, volunteering can reveal whether the field is right for you.  Biocuration requires a particular personality, including attention to detail and a desire to organize. While some people derive extreme satisfaction from it, others can find it quite tedious. Dr. Berardini noted, “if through volunteering, you find biocuration brings you joy, this is the right career for you.”
  • Participate in hackathons, data jamborees, biomedical competitions: these events bring together researchers across various career stages, from junior biologists to practicing clinicians, and are opportunities to network, build your CV, and contribute to impactful work. Examples are biomedical competitions like Dream Challenges, and hackathons, data jamborees, face-to-face meetings, and online events hosted by Dr. Mulder to facilitate community curation of H3Africa projects. 
  • Do as much training as you can:  Courses are available, such as massively open online courses (MOOCs), college courses, and the newer Post-Graduate Certificate in Biocuration offered by the University of Cambridge.
  • Build your skill set: Search for job advertisements to determine what qualifications are needed, and work towards enhancing your skill set and competencies that meet job requirements. As an outcome of the Careers in Biocuration Workshop at the Biocuration 2018 conference, we created a generic position description for a biocuration profession, which is available here.

Biocuration career opportunities

A lot of opportunities exist in the biocuration field: biocuration in academia, which may entail biocuration for grant-funded database projects and ontology development, such as the work of Dr. Jaiswal; community-based bioinformatics and curation projects, such as those led by Dr. Mulder; and biocuration in a non-profit business setting, as Dr. Berardini’s work at Phoenix Bioinformatics. Biocuration opportunities are also available in the industry as companies are recognizing the importance of curating and standardizing data (for example, standardizing clinical trial data),  in government agencies; and even as independent consultants

The skills gained as biocurators, such as attention to detail, the ability to take in and synthesize data, and computational skills, are very valuable and can be translated to different areas, such as other areas of science or technologies.

Biocuration is a growing field and we anticipate that, as the amount of biological data being generated increases, so will the demand for curators. The ISB aims to promote the field and support our community through offering dissemination of job openings (see regular posts on our website here.), training opportunities, and networking. The ISB also promotes collaborations and exchanges between biocuration groups and offers funding for exchange fellowships. This fellowship will fund members to visit another laboratory or organization for training or knowledge sharing; more information is available here.

Researchers have the opportunity to better structure their datasets, share their data in repositories, and better structure the content that they publish, however, they are often unaware of the career opportunities in biocuration. We have not only an opportunity to promote the biocuration field, but also the responsibility to train the future generations, provide knowledge transfer, and have succession plans for those coming up after us. 


The election of the new International Society for Biocuration Executive Committee (ISB EC) will be held from September 27 – October 04, 2021.

A list of candidates for 2021 are available here.

The Executive Committee is composed of nine (9) members, each with a 3-year term. Being a member of the Executive Committee is a great way to become directly involved with the work of our society, and contribute to the decisions that are taken on behalf of the biocuration community. We would like to encourage all members interested in running for election to get involved in the process.

Serving on the ISB EC minimally involves attending monthly (1 hour)  teleconference meetings, following up on any action items from meetings, and  promoting the ISB’s activity to members and non-members. Examples of activities performed by EC members include reviewing micro-grant submissions, preparing call for participation for hosting Biocuration meetings, preparing materials for the ISB election, monitoring ISB mail and maintaining the website. We particularly encourage candidates with web development skills, or who have experience working with WordPress to apply. The typical workflows involve basic knowledge of Git, PHP/HTML/CSS for fine tuning of the WordPress website, WordPress plugins management, domain name/email redirection management.

There are specific positions such as Chair, Secretary and Treasurer that do require a larger time commitment, as they are in charge of leading the steps of the EC and by extension the membership. There is no expectation that new EC members would take on these responsibilities.

4 positions on the Executive Committee are up for election in 2021/2022. These positions are currently held by Mary Ann Tuli, Frederic Bastian, Jane Lomax, and Sandra Orchard. Mary Ann, Frederic, and Jane can re-stand for election. (The current ISB EC members are here.)

2021 Electoral Process

A) The Nominating Committee:

A Nominating Committee (NC) has been formed to oversee the electoral process, to review applications, and establish the final list of candidates. We are very grateful for their assistance with the execution of this election. The members of the 2021 Nominating Committee are:

Cristina Casals
Moni Munoz-Torres
Leonore Reiser
Laurens Wilming
Val Wood

B) Instructions to Candidates: 

  1. If you would like to run for a position on the Executive Committee, you must first register your intent with the NC by emailing
  1. Please fill out this form by 27 August 2021, which includes a ‘statement of intent‘, a brief biographical sketch, and a ‘conflict of interests‘ statement describing any activities, memberships of other associations, editorial positions on journals, etc. (Please email us at if you are unable to access this form.)

C) Timeline:

  • Nominations will be received until 27 August 2021.
  • The NC will review all candidacies and share their selections with the ISB Executive Committee by 13 September 2021.
  • Candidates must be announced to the membership and on website (with letters of intent) by 20 September 2021.
  • Voting will take place online over the course of one week from 27 September – 04 October 2021. (Further details about the voting process will be shared soon). The election officer is Petra Fey.
  • Only current members, as of 20 September 2021, who receive an email* will be allowed to vote.

*Note – please note that if you do not receive the email please contact us at

The Nominating Committee is looking forward to receiving your applications!

The Future of Biocuration: Panel discussion from the Biocuration2021 virtual conference

By: Nicole Vasilevsky and Jane Lomax

Like all in-person gatherings in this past year, the annual International Society for Biocuration conference went virtual in 2021. At the inaugural session on April 13, 2021, a group of panelists discussed ‘the future of biocuration’. The panel was moderated by Rama Balakrishnan, who has served on the ISB Executive Committee since 2017, and is the co-chair (along with Susan Bello from the Jackson Laboratory) of the Biocuration2021 conference. Rama was joined by four panelists from various roles in academia and industry to discuss what is in store for our community. The recording is available here.

What is curation: Distilling knowledge from information

Rama initiated the discussion with the fundamental and relevant question, ‘what does the word curation mean to you?’ Working in the biocuration field, many curators can probably relate to this question, a question that is frequently asked by people who are outside this field. The role of a curator at a museum, for example, may be more familiar, but biocuration is a less well-understood field. Rama, who has held varying roles as a curator (academic and industry), tried to get after how the actual task of curation may differ amongst us. Sandra Orchard, from EBI shared a classical definition of ‘turning unstructured data into structured searchable data’, but recognized this is not always true as, whilst some curation tasks involve making data more structured, text-minable and machine-readable, the outcome of data curation does not always result in completely structured data. Carol Bult from MGI defined curation as “applying semantic standards to ensure data findability and aggregation.” 

Coming from the industry perspective, both Kambiz Karimi (Myriad Women’s Health) and James Malone (SciBite) agreed. Curation involved meaning-based capture and structuring of content using controlled vocabularies. Data curation can also include data cleaning, which is often a pre-curation task. Curation can help improve and enrich data interpretability and ultimately add value. It allows for enhanced search, querying, semantic integration and meta-analysis. 

How can we ensure quality?

Given that the panelists all agreed on a high level definition of curation, Rama then asked about ensuring data quality. What does good quality mean and what are metrics to assess quality? Different quality control (QC) and quality assurance (QA) processes apply, depending on the type of curation that is being done, whether you are curating tax forms (as James did in a summer job long ago) or curating the mouse biology literature. Some processes that were discussed by Carol and others  included intercurator checks, crowdsourcing feedback from downstream users, practices to ensure collaboration, regression testing to ensure continuity and consistency across datasets. Sandra pointed out that curators cannot be all things to everything, and stressed the importance of specialist databases with curators who are domain experts who can take the first pass at the curation, and build re-processing pipelines or scoring mechanisms to export high quality subsets to other data resources.

James and Rama noted how detecting outliers can assist with quality checks. However, it may not always be easy to detect the outliers without the expert knowledge in a specific area. For example, Rama curates patient data at Genentech, and once came across a data reporting a patient had a 100℃ fever (rather than 100℉), which was easy to spot as an error. However, in a more complicated clinical use case, detecting erroneous data points may not be so obvious and require more specialized knowledge.

Kambiz shared that Myriad has several QC approaches, including a peer review process, a spot checking program to have curators spot check each other’s work and a quality check process that compares their classification to previous classifications from the community. 

Sandra also noted the importance of researchers collaborating with curators prior to publication. She shared an anecdote where an author published a paper with an erroneous dataset, a simple mistake where a row in a spreadsheet had been accidentally deleted, causing nonsensical results. The curator picked this up and contacted the author, who was able to correct it, but this speaks to the importance of pre-submitting data to the database before publication and the important role a curator can play with the research community. 

Opportunities with Machine Learning and Automation 

While a lot of biocuration is done manually, more and more processes and workflow are being automated, with text mining, machine learning (ML), natural language processing (NLP) and AI.  The panel was asked their opinion on how AI and ML will affect the work of biocurators? Sandra assured us that machine learning will enhance our work, but is not concerned that it will replace human curation. Data is too messy, the literature is too unstructured, and human review and curation is going to be needed in the foreseeable future. James echoed her sentiments in saying, “[Machine Learning] will become an assistant, it will not replace subject matter experts who are biologists, scientists, curators. It will play a role in helping us.” James sees it as an opportunity for biocuration, where we should work to exploit advances in deep learning, noting the importance of biocuration is more pronounced now than ever. We can train AI to aid in biocuration and we can work together. In addition, quality Machine Learning/AI requires training sets that have been human-curated, and the advances of these technologies will require more curators; this is a new opportunity for this community. Carol agreed, but brought up the point that there may be the perception that these technologies are advanced to the point where curators can be replaced. This is causing challenges with funding for biocuration due to the notion that machine learning can do all or most of what human curators do. While machine learning can assist with making biocuration scalable, we need to do better as a community at communicating how these things interrelate and feed off each other.

“Biocuration has never been more valuable than it is now and yet under appreciated.” It’s something the Society can help us tackle: this perception and articulate how manual and machine learning biocuration can go hand and hand. – Carol Bult

Approaching authors

An audience member inquired whether database curators approached authors for clarification about their published data, and whether authors were responsive. Kambiz shared that they did approach authors when there was ambiguity with the content or data in an article. Sandra concurred, and alluded to the challenge with time dependencies; if a paper was recently published (1 year – 18 months ago), they frequently got a response. If a paper is over 3 years old, in general, they were less likely to get a reply, as the first author may have moved on and the PI is unfamiliar with the details of the data. 

This may speak to an opportunity to better train researchers in becoming familiar with curation methods and standards, to allow for unambiguous reporting in their publications. Requirements to share data at the time of publication will also help address this need.

Getting the journals involved

This led to the next question about working with the journals to publish data in a more structured way. Carol has had some experience working with journals in the mouse community, who are careful about publishing mouse names with the accepted terminology and nomenclature. She did mention that sometimes there is push back as to whether the recommended standard is the accepted standard, and whether this is going to evolve or change in the future. We all may be familiar with the situation below.


This is an opportunity for a systematic community approach, the ISB should promote standards adoption to the journals.

Sandra pointed out that a challenge with approaching journals to use our standards, is the sheer number of journals. A more targeted approach may be more appropriate. For example, the proteomics community was successful in getting a restricted number of journals in their field to require data sharing to ProteomeXchange ( prior to publication.

Sandra also recommended that we first talk amongst ourselves as a community and define our needs, and what standards to adopt and promote, and then approach the journals.

The elephant in the room: Funding

In recent years, NIH funding has decreased to various databases. How do we sustain our own careers, and train the next generation of curators? 

Kambiz felt it is easier to justify the need for curation due to the regulatory aspect of his industry. Even if there are NLP based processes to extract gene to disease relationships,  manual review will always be needed. He foresees  automated processes will assist with manual curation going forward.

Carol emphasized that we need to promote how important curation is to data science. Data science is recognized as an important field, therefore we should frame curation within its role in data science. We have to be better about explaining return on investment in curation – what can we do when data is curated, and we wouldn’t be able to do, if it wasn’t? She pointed out that the reality that biocuration is considered infrastructure, which is largely ignored, until it is broken. As a Society, can we demonstrate the impact that biocuration has on advancing data science?

Sandra reiterated that we need to make ourselves more visible, we need people outside the community to understand what we do. We need to work together as a community efficiently to not duplicate efforts, we need to align on standards, use specialist databases for initial analysis and data cleaning, and use the baseline resources like accession numbers, and show good examples of good curation.

Continue the conversation on Slack.

Do you have topics you’d like to discuss in a future panel, or suggested speakers? Please let us know (

EBI Training: A guide to molecular interactions


During this webinar, we will give you an introduction to molecular interactions and how to find these through the molecular interaction database IntAct. We will show you examples of how you can search for interaction data, how to create molecular interaction networks using our network viewer based on Cytoscape.js and how to download this data for further analysis.

We will also have a quick look at two other resources, PSICQUIC and IMEx, that integrate molecular interactions from several sources.

Who is this course for?

This webinar is aimed at students or early researchers beginning to use bioinformatics resources in their studies/research who wish to learn more about molecular interactions and IntAct. No prior knowledge of bioinformatics is required, but undergraduate level knowledge of biology would be useful.


By the end of the webinar you will be able to:

Explain what molecular interactions are
Describe what IntAct can be used for
Search for interaction data

26 May 2021

15:30 – 16:30 ( BST )

Online and Free

2021 Biocuration Awards Nominations

The International Society for Biocuration is happy to announce the 2021 Biocuration Awards.

In 2021, the ISB will give two different awards to people who have made a significant impact in the field of biocuration. We welcome your nominations!

Description of the awards:

1) Award for Exceptional Contributions to Biocuration
ISB’s Exceptional Contributions Award recognizes a person who is a leader or a pioneer in the field of biocuration, and whose work has been fundamental to the advancement of biocuration.

2) Biocuration Career Award
The Biocuration Career Award recognizes biocurators in non-leadership positions who have made sustained contributions to the field of biocuration. Those who hold Principal Investigator or Group Leader positions are not eligible for the Biocuration Career Award.

Each award recipient will be invited to present a talk at the 2021 International Biocuration Conference, which will be held virtually this year (the dates and details are to be determined).

Nomination process:
Nominations will be reviewed by the 2021 ISB Awards Committee, comprised of one member of the ISB’s Executive Committee (ISB-EC) and six (6) additional members from the wider research community; these members were nominated by the ISB-EC based on diversity in area of expertise, organization type, role, and geographic location.

Who can nominate and/or be nominated?

·      Any currently active ISB member may nominate anyone in the field of biocuration, whether the potential nominee is a member of ISB or not.

·      Members of the ISB can make no more than 1 nomination per award.

·      Current members of the Executive Committee or the ISB Award Committee are not eligible for the awards.

·      Self-nominations will not be considered.

How to submit a nomination:

Nominations should be sent via email to the awards committee at with the subject line “Biocuration Awards Nominations”.

The nomination email should contain all the following fields:

·      Nominator details (name, e-mail and affiliation, member of ISB);

·      Nominee details (name, e-mail and affiliation);

·      Type of award nomination (either Exceptional Contributions to Biocuration or Biocuration Career Award);

·      Short list of scholarly contributions (a maximum of 50 words);

·      Brief description of why you are recommending this person (a maximum of 350 words).

Deadline for submitting nominations:  Friday, February 26, 2021

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